How to Install HedgeDoc on Rocky Linux 9 Using Docker + Nginx + SSL

HedgeDoc (HackMD/CodiMD Successor) on Rocky Linux 9 (Docker + Nginx + SSL)

HedgeDoc is an open-source collaborative markdown editor designed for real-time note-taking, documentation, and presentations. As the successor to HackMD/CodiMD, it enables multiple users to edit and share markdown documents simultaneously, offering built-in presentation mode, media embedding, and third-party authentication (GitHub, GitLab, LDAP, OIDC). HedgeDoc is ideal for teams, developers, educators, and organizations seeking secure, self-hosted collaboration tools.

Running HedgeDoc on Rocky Linux 9, a RHEL-compatible enterprise-grade operating system, ensures stability, long-term support, and security. Combined with Docker Compose, PostgreSQL, Nginx, and SSL encryption, this setup provides a robust and production-ready foundation for teams that value performance and privacy.

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Architecture Overview

Layer	Component	Role
OS	Rocky Linux 9	Enterprise-grade, RHEL-compatible Linux distribution
Container Runtime	Docker Engine + Compose	Orchestrates HedgeDoc, PostgreSQL, and supporting services
Application	HedgeDoc (Node.js)	Core web application for markdown collaboration and editing
Database	PostgreSQL 15	Stores users, documents, sessions, and configuration data
Reverse Proxy	Nginx	Handles HTTPS, routing, caching, and gzip compression
TLS	Let’s Encrypt / PKI	Provides secure HTTPS connections for web access

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Why Use HedgeDoc?

• Real-time collaborative editing – work together on markdown documents instantly.
• Full markdown support – GitHub-flavored markdown (GFM) with code highlighting, KaTeX, and Mermaid diagrams.
• Presentation mode – transform markdown files into interactive slides.
• Authentication support – integrate with GitHub, GitLab, LDAP, or OAuth2 providers.
• Media and file uploads – embed images and media directly into notes.
• Privacy-first and self-hosted – all data remains on your server.
• Lightweight and modern – optimized for minimal resource usage and high performance.

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HedgeDoc vs Other Markdown Collaboration Tools

Feature/Capability	HedgeDoc (Self-hosted)	HackMD (Cloud)	Notion (Cloud)	Obsidian (Local)
Hosting	Self-hosted / Docker	Cloud	Cloud	Local filesystem
Real-time editing	✅ Yes	✅ Yes	✅ Yes	❌ No
Markdown support	✅ Full (GFM)	✅ Full	Partial	✅ Full
Authentication	OAuth2 / LDAP / SSO	GitHub / Google	Notion account	Local only
Collaboration	✅ Real-time	✅ Real-time	✅ Real-time	❌ No
Privacy	100% self-hosted	Cloud storage	Cloud storage	Local only
Cost	Free, open-source	Paid tiers	Subscription	Free

HedgeDoc stands out as the most feature-complete open-source markdown collaboration platform, offering a HackMD-like experience with full data ownership and enterprise-grade security.

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Security & Best Practices

• Deploy behind Nginx or Traefik with HTTPS enabled (Let’s Encrypt recommended).
• Store sensitive environment variables (JWT secrets, DB credentials) in Docker secrets or .env.
• Limit PostgreSQL access to the internal Docker network.
• Enable SELinux enforcing mode for extra protection.
• Use firewalld to expose only ports 80 and 443.
• Keep Rocky Linux, Docker, and HedgeDoc images updated regularly.
• Automate SSL certificate renewal using Certbot or Traefik ACME.
• Set up PostgreSQL backups (cron jobs or snapshot strategy).
• Enforce strong password and authentication policies for users.

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Typical Use Cases

• Team collaboration and documentation for DevOps or developers.
• Internal company wiki with markdown-based pages and permissions.
• Lecture notes and shared research for educational environments.
• Real-time meeting notes and brainstorming sessions.
• Markdown presentation creation for workshops or tech events.
• Knowledge sharing and developer journals within teams.

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Deploying HedgeDoc on Rocky Linux 9 with Docker, Nginx, and SSL gives you a fast, secure, and fully self-hosted real-time markdown platform, ideal for collaborative documentation, internal wikis, and note-taking — all under your complete control.

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Create a Cloud Server Instance on Shape.Host

Before installing HedgeDoc, you need a fresh Rocky Linux 9 server.
Here’s how to create one using Shape.Host Cloud VPS:

Go to https://shape.host and log in.

Click the “Create” button in the top-right corner.

Select “Instance” from the dropdown.

Choose your preferred server location (closest region = best speed).

Select the operating system: Rocky Linux 9 (64-bit).

Choose a plan — recommended minimum:

2 vCPUs

4 GB RAM

20 GB SSD/NVMe

Click Create Instance to deploy the server.

Copy the server’s IP address from your dashboard.

Now your Rocky Linux 9 server is ready for SSH access.

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Step 1: Update Your Server

dnf update

Refreshes the system and installs the newest security patches.

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Step 2: Remove Old or Conflicting Docker Versions

dnf remove docker docker-client docker-client-latest docker-common docker-latest docker-latest-logrotate docker-logrotate docker-engine

This ensures the system has no old Docker components that might cause conflicts with the official Docker CE installation.

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Step 3: Install Required Tools

dnf install yum-utils curl device-mapper-persistent-data lvm2

These packages do the following:

• yum-utils → needed for yum-config-manager (to add Docker repo)
• curl → required to download files
• device-mapper + lvm2 → storage engine dependencies that Docker needs

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Step 4: Add Docker CE Repository

yum-config-manager --add-repo https://download.docker.com/linux/centos/docker-ce.repo

Adds the official Docker repository for CentOS/Rocky, ensuring up-to-date Docker packages.

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Step 5: Install Docker Engine & Docker Compose

dnf install docker-ce docker-ce-cli containerd.io docker-buildx-plugin docker-compose-plugin

This installs:

• Docker Engine (CE)
• Docker CLI tools
• containerd runtime
• Buildx plugin
• Docker Compose v2 plugin (docker compose)

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Step 6: Enable Docker at Boot

systemctl enable docker

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Step 7: Start Docker

systemctl start docker

Starts the Docker service immediately.

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Step 8: Verify Docker Compose

docker compose version

If a version is printed, Docker Compose is installed correctly.

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Step 9: Create HedgeDoc Directory

mkdir -p /opt/hedgedoc

Creates a dedicated folder to store your HedgeDoc files.

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Step 10: Move Inside the Directory

cd /opt/hedgedoc

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Step 11: Create Docker Compose File

nano /opt/hedgedoc/docker-compose.yml

Paste your exact configuration:

services:

  database:
    image: postgres:15
    container_name: hedgedoc_db
    environment:
      POSTGRES_USER: hedgedoc
      POSTGRES_PASSWORD: strongpassword
      POSTGRES_DB: hedgedoc
    volumes:
      - db-data:/var/lib/postgresql/data
    restart: unless-stopped

  hedgedoc:
    image: linuxserver/hedgedoc:latest
    container_name: hedgedoc_app
    depends_on:
      - database
    environment:
      PUID: "1000"
      PGID: "1000"
      TZ: "Europe/Bucharest"
      CMD_DB_URL: "postgres://hedgedoc:strongpassword@database:5432/hedgedoc"
      CMD_DOMAIN: "YOUR_DOMAIN"
      CMD_PROTOCOL_USESSL: "true"
      CMD_URL_ADDPORT: "false"
      CMD_ALLOW_ORIGIN: "*"
      CMD_USECDN: "false"
      CMD_ALLOW_FREEURL: "true"
    volumes:
      - config:/config
    ports:
      - "3000:3000"
    restart: unless-stopped

volumes:
  db-data:
  config:

What this file does:

• Deploys PostgreSQL 15 as the database
• Deploys HedgeDoc using linuxserver/hedgedoc
• Connects HedgeDoc to PostgreSQL
• Exposes the app on port 3000
• Stores data persistently using Docker volumes

Save file: CTRL+O → ENTER → CTRL+X

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Step 12: Start HedgeDoc & PostgreSQL

docker compose up -d

• Downloads all required images
• Starts everything in the background
• Sets up persistent volumes

At this point, HedgeDoc is running internally.

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Step 13: Install Nginx

dnf install nginx

Nginx will act as a reverse proxy, forwarding external traffic to HedgeDoc.

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Step 14: Enable Nginx

systemctl enable nginx

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Step 15: Start Nginx

systemctl start nginx

Starts the web server right away.

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Step 16: Create Nginx Reverse Proxy

nano /etc/nginx/conf.d/hedgedoc.conf

Paste:

server {
    listen 80;
    server_name YOUR_DOMAIN;

    location / {
        proxy_pass http://127.0.0.1:3000;
        proxy_set_header Host $host;
        proxy_set_header X-Real-IP $remote_addr;
        proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
        proxy_set_header X-Forwarded-Proto $scheme;
    }
}

What this does:

• Accepts requests on port 80
• Forwards them to HedgeDoc running on localhost:3000
• Passes correct headers (IP/host/protocol)
• Prepares the domain for SSL

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Step 17: Test Nginx Configuration

nginx -t

If no errors → continue.

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Step 18: Reload Nginx

systemctl reload nginx

Applies the new reverse proxy configuration.

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Step 19: Install Certbot (Let’s Encrypt)

dnf install certbot python3-certbot-nginx

This installs the tools needed to generate free SSL certificates.

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Step 20: Generate SSL Certificate

certbot --nginx -d rockylinux-tutorials.shape.host

Certbot will:

• Verify your domain
• Configure HTTPS automatically
• Update your Nginx config
• Reload Nginx

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Step 21: Reload Nginx Again

systemctl reload nginx

Finalizes your HTTPS configuration.

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HedgeDoc is Now Installed & Secured!

Open your browser and visit:

https://YOUR_DOMAIN

You now have:

• HedgeDoc running in Docker
• PostgreSQL database
• Nginx reverse proxy
• Valid SSL certificate
• A fully production-ready installation

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For the best performance and reliability, deploy your apps on Shape.Host Cloud VPS, especially Docker applications like HedgeDoc.